PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003217-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 552aa    MW: 59653.7 Da    PI: 5.0843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003217-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11368410754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  NNU_003217-RA 368 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 410
                    79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16364430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9367410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-16368423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.48E-13368414No hitNo description
CDDcd048731.61E-6481522No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MLSRVNGVNS VVWMDEQGED EDAVSWTRSN GGGDNKDDMG SLSTFKSMLG DDWYVNGNGN  60
PSHHDFQSVQ NHPEIKDIAF PSNPTAAESL LLQPVDSSSS CSPSSVFNLD PSQVQPFLPP  120
KSCLSSLLNV VCSNPFDNGF DLGCDPGFLA PLHGNQTSSS SVLMSRGAGV LNGFGGLSSQ  180
GQMDTPDFSS NSQFPATRLL PLGGDSTTVG TGFNTTDFGG FEGSANNLFL NRSKVLRPLE  240
IFPPVGAQPT LFQKRAALRQ NSAAADKGGN LGFFGLEGGQ HSARVEGSKG KTELEEEQEK  300
RRKNNEEDEV EEASVDGSGL NYDSDEAMEN NKVEDHAKNA GNNSNTISTV TGIDQKGKKK  360
GLPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIEYLKEL LQRINDLHNE  420
LESTPPGSSL PPSTSFHPLT PTLPTLPCRV KEELCPSSLP SPNSQPARVE VRVREGRAVN  480
IHMFCARRPG LLLSTMKALD TLGLDIQQAV ISCFNGFALD VFRAEQCKEG PDVPPEDIKA  540
VLLNSAGFHS MI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357375KKKGLPAKNLMAERRRRKK
2369376ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249206.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-152ICE1_ARATH; Transcription factor ICE1
TrEMBLS4WVT00.0S4WVT0_9R
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-108bHLH family protein